-
Salivary metabolomic identification of biomarker candidates for oral melanoma and oral squamous cell carcinoma in dogs
- Back
Metadata
Document Title
Salivary metabolomic identification of biomarker candidates for oral melanoma and oral squamous cell carcinoma in dogs
Author
Ploypetch S., Luo X., Zhao S., Roytrakul S., Li L., Suriyaphol G.
Affiliations
Faculty of Agricultural Innovation and Technology, Rajamangala University of Technology Isan, Nakhon Ratchasima Campus, Nakhon Ratchasima, 30000, Thailand; Microbial Diversity and Utilization Research Team, Thailand Bioresource Research Center (TBRC), National Center for Genetic Engineering and Biotechnology (BIOTEC), Pathumthani, 12120, Thailand; Department of Biochemistry and Microbiology, Faculty of Pharmaceutical Sciences, Chulalongkorn University, Bangkok, 10330, Thailand
Type
Article
Source Title
Heliyon
ISSN
24058440
Year
2024
Volume
10
Issue
12
Open Access
All Open Access, Gold
Publisher
Elsevier Ltd
DOI
10.1016/j.heliyon.2024.e32825
Abstract
Two novel endophytic bacterial strains, designated KSS8T and KSS12T, were isolated from the stems and roots of sugarcane, respectively, collected in Nakhon Ratchasima, Thailand. They were Gram-stain-negative, aerobic, and rod-shaped. The strain KSS8T was a motile bacterium with a subpolar flagellum, while the strain KSS12T was non-motile. Strains KSS8T and KSS12T were closely related to Lichenicola cladoniae PAMC 26569T (97.3 and 95.6 %, respectively) and Lichenicoccus roseus KEBCLARHB70RT (97.2 and 95.8 %, respectively) based on the similarity on their 16S rRNA gene sequence. This similarity corresponded to their phylogenomic positions within the evolutionary radiation of the family Acetobacteraceae. The average nucleotide identities and digital DNA-DNA hybridization values between the genome sequences of the two strains and other genera were significantly lower than the defined threshold values of 95–96 % and 70 %, respectively, which are used for the delineation of prokaryotic species. Both strains contained summed feature 8 (C18:1 ?7c and/or C18:1 ?6c), C16:0, C19:0 cyclo ?8c, C18:0, and C18:1 2OH as the predominant cellular fatty acids, but C18:3 ?6c (6, 9, 12) were found only in strain KSS12T. Based on phenotypic, chemotaxonomic, phylogenetic, and genomic analyses, these strains clearly represented two novel genera within the family Acetobacteraceae, for which the name Endosaccharibacter gen. nov., with the type species Endosaccharibacter trunci sp. nov. (type strain, KSS8T = TBRC 14669T = NBRC 115232T = KCTC 92115T = LMG 32414T) and the name Rhizosaccharibacter gen. nov., with the type species Rhizosaccharibacter radicis sp. nov. (type strain, KSS12T = TBRC 13066T = NBRC 114898T = KCTC 82433T = LMG 32137T) are proposed. ? 2024 The Authors
Keyword
Acetobacteraceae | Endosaccharibacter | Rhizosaccharibacter | Sugarcane
License
CC BY-NC
Rights
Authors
Publication Source
WoS