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Proteomics dataset for the analysis of the effects of Grammatophyllum speciosum extracts on RAW 264.7 cells
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Metadata
Document Title
Proteomics dataset for the analysis of the effects of Grammatophyllum speciosum extracts on RAW 264.7 cells
Author
Yingchutrakul Y. Krobthong S.
Affiliations
National Omics Center NSTDA Pathum Thani 12120 Thailand; Center of Excellence in Natural Products Chemistry (CENP) Department of Chemistry Faculty of Science Chulalongkorn University Bangkok 10330 Thailand
Type
Data Paper
Source Title
Data in Brief
ISSN
23523409
Year
2023
Volume
47
Open Access
All Open Access Gold Green
Publisher
Elsevier Inc.
DOI
10.1016/j.dib.2023.108937
Abstract
Grammatophyllum speciosum is a traditional plant with beneficial functionalities for health. G. speciosum extracts can inhibit collagenase and nitric oxide without cellular toxicity in keratinocytes. The extracts have shown potential for use and formulation as cosmeceutical ingredients. However the molecular mechanisms underlying these activities remain unknown. In this dataset we used a proteomics approach to clarify the proteins that participate in the response of RAW264.7 macrophage cells to G. speciosum extracts. Cells were divided into two experimental groups i.e. the control and treatment groups. In turn the treatment group included two subgroups that were treated with 20 and 100 ?g/mL of the extracts respectively. The experiments were conducted using two biological replicates. The dataset was obtained from label-free proteomics using high-resolution tandem mass spectroscopy (LC-MS/MS) with four technical replicates. The quality control (QC) of the proteomics dataset was carried out using chromatography at the MS1 and MS2 levels peptide mass deviation peptide mass cleavage sequence length and total peptide intensity. The global proteome profile was analyzed using a principal component analysis (PCA). These datasets can clarify the potential pathways or proteins involved in the response to the extracts to support their potential applicability for the development of cosmeceutical ingredients. ? 2023 The Author(s)
Keyword
Industrial Classification
Knowledge Taxonomy Level 1
Knowledge Taxonomy Level 2
Knowledge Taxonomy Level 3
License
CC BY
Rights
Author
Publication Source
WOS