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Multiscale simulation studies of geometrical effects on solution transport through nanopores
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Document Title
Multiscale simulation studies of geometrical effects on solution transport through nanopores
Author
Chaimanatsakun A, Japrung D, Pongprayoon P
Name from Authors Collection
Affiliations
National Science & Technology Development Agency - Thailand; National Nanotechnology Center (NANOTEC); Kasetsart University; Kasetsart University; Kasetsart University
Type
Article
Source Title
MOLECULAR SIMULATION
ISSN
0892-7022
Year
2018
Volume
44
Issue
4
Open Access
Green Submitted
Publisher
TAYLOR & FRANCIS LTD
DOI
10.1080/08927022.2017.1334881
Format
Abstract
Due to intrinsic properties, solid-state nanopores are widely used in nanopore technology. Different geometries (cylindrical (CY), hourglass (HG) and conical (CO)) of artificial nanopores have been fabricated and studied. Each was found to promote different transport abilities experimentally. To explore such pore effects, the combination of finite element (FE) and molecular dynamics (MD) simulations with applied electric filed (150mV) were performed. The dimension of anion-selective protein pore was used as a nanopore template. Different pore geometries with a narrowest diameter ranging from 1.8 to 1.8m were studied here. Firstly, we found that the narrowest regions at a pore orifice in CO and constriction site in HG maximise water velocity and consequently control a water flow rate. Secondly, CY triggers the highest water flux, but low ion selectivity, whilst the funnel-like geometries (HG and CO) enhance the ion selectivity significantly. Both HG and CO show similar degrees of permeant flux and selectivity. The orifice and constriction site in CO and HG are the main player for selectivity and permeation control. Thirdly, the transport properties are tuneable by changing the flow direction in asymmetric CO pore. The tip-to-base flow in CO obviously promotes stronger anion selectivity than the base-to-tip one.
Keyword
finite element | GROMACS | ion flux | molecular dynamics simulations | Nanopores
Funding Sponsor
Kasetsart University Research and Development Institute (KURDI) [S-K1.56, S-K161.59]; Thailand Research Fund [TRG5880230]; National Research Council of Thailand (NRCT); Health Systems Research Institute (HSRI); Royal Society of Chemistry (RSC)
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