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Knockdown of Death-Associated Protein Expression Induces Global Transcriptome Changes in Proliferating and Differentiating Muscle Satellite Cells
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Metadata
Document Title
Knockdown of Death-Associated Protein Expression Induces Global Transcriptome Changes in Proliferating and Differentiating Muscle Satellite Cells
Author
Horton KA, Sporer KRB, Tempelman RJ, Malila Y, Reed KM, Velleman SG, Strasburg GM
Name from Authors Collection
Affiliations
Michigan State University; Michigan State University; National Science & Technology Development Agency - Thailand; National Center Genetic Engineering & Biotechnology (BIOTEC); University of Minnesota System; University of Minnesota Twin Cities; University System of Ohio; Ohio State University
Type
Article
Source Title
FRONTIERS IN PHYSIOLOGY
Year
2020
Volume
11
Open Access
gold, Green Published
Publisher
FRONTIERS MEDIA SA
DOI
10.3389/fphys.2020.01036
Format
Abstract
Death-associated protein (DAP) undergoes substantial changes in expression during turkey skeletal muscle development, decreasing from the 18 day embryonic stage to 1 day posthatch, and again from 1 day posthatch to 16 weeks of age. These changes suggest that DAP plays an important role at critical stages of the developmental process. The objective of this study was to elucidate the role of DAP in muscle development by examining the effect of reducedDAPexpression on global gene expression in proliferating and differentiating turkeypectoralis majormuscle satellite cells. Small interfering RNA was used to knock down expression ofDAPand the transcriptome was subsequently profiled using a turkey skeletal muscle long oligonucleotide microarray. Microarray data were corroborated using quantitative real-time PCR. In proliferating cells, 458 loci, resulting in 378 uniquely annotated genes, showed differential expression (false discovery rate, FDR < 0.05). Pathway analysis highlighted altered eukaryotic translational initiation factors (eIFs) signaling, protein ubiquitination, sirtuin signaling, and mechanistic target of rapamycin (mTOR) signaling as the primary pathways affected in the knockdown proliferating cells. The findings underpinned the potential DAP involvement in cell proliferation of turkey satellite cells through the coordination between protein synthesis and cell cycle. In differentiating cells, 270 loci, accounting for 189 unique genes, showed differential expression (FDR < 0.05). Decreased expression of genes encoding various myofibrillar proteins and proteins involved in sarcoplasmic reticulum calcium flux suggests that DAP may affect regulation of calcium homeostasis and cytoskeleton signaling. This study provides the first evidence that reduced expression ofDAPsignificantly alters the transcriptome profile ofpectoralis majormuscle satellite cells, thereby reducing proliferation and differentiation.
Industrial Classification
Knowledge Taxonomy Level 1
Knowledge Taxonomy Level 2
Knowledge Taxonomy Level 3
Funding Sponsor
USDA National Institute of Food and Agriculture [2005-3560415628]
License
CC BY
Rights
Authors
Publication Source
WOS