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Karyological characterization and identification of four repetitive element groups (the 18S-28S rRNA gene, telomeric sequences, microsatellite repeat motifs, Rex retroelements) of the Asian swamp eel (Monopterus albus)
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Metadata
Document Title
Karyological characterization and identification of four repetitive element groups (the 18S-28S rRNA gene, telomeric sequences, microsatellite repeat motifs, Rex retroelements) of the Asian swamp eel (Monopterus albus)
Author
Suntronpong A, Thapana W, Twilprawat P, Prakhongcheep O, Somyong S, Muangmai N, Peyachoknagul S, Srikulnath K
Name from Authors Collection
Affiliations
Kasetsart University; National Science & Technology Development Agency - Thailand; National Center Genetic Engineering & Biotechnology (BIOTEC); Kasetsart University; Kasetsart University; Naresuan University
Type
Article
Source Title
COMPARATIVE CYTOGENETICS
ISSN
1993-0771
Year
2017
Volume
11
Issue
3
Page
435-462
Open Access
Green Submitted, gold, Green Published
Publisher
PENSOFT PUBLISHERS
DOI
10.3897/CompCytogen.v11i3.11739
Format
Abstract
Among teleost fishes, Asian swamp eel (Monopterus albus Zuiew, 1793) possesses the lowest chromosome number, 2n = 24. To characterize the chromosome constitution and investigate the genome organization of repetitive sequences in M. albus, karyotyping and chromosome mapping were performed with the 18S - 28S rRNA gene, telomeric repeats, microsatellite repeat motifs, and Rex retroelements. The 18S - 28S rRNA genes were observed to the pericentromeric region of chromosome 4 at the same position with large propidium iodide and C-positive bands, suggesting that the molecular structure of the pericentromeric regions of chromosome 4 has evolved in a concerted manner with amplification of the 18S - 28S rRNA genes. (TTAGGG) n sequences were found at the telomeric ends of all chromosomes. Eight of 19 microsatellite repeat motifs were dispersedly mapped on different chromosomes suggesting the independent amplification of microsatellite repeat motifs in M. albus. Monopterus albus Rex1 (MALRex1) was observed at interstitial sites of all chromosomes and in the pericentromeric regions of most chromosomes whereas MALRex3 was scattered and localized to all chromosomes and MALRex6 to several chromosomes. This suggests that these retroelements were independently amplified or lost in M. albus. Among MALRexs (MALRex1, MALRex3, and MALRex6), MALRex6 showed higher interspecific sequence divergences from other teleost species in comparison. This suggests that the divergence of Rex6 sequences of M. albus might have occurred a relatively long time ago.
Keyword
Asian swamp eel | C-band | dispersion | microsatellite repeat | retroelement
Industrial Classification
Knowledge Taxonomy Level 1
Knowledge Taxonomy Level 2
Funding Sponsor
Thailand Research Fund, the Commission on Higher Education and Kasetsart University (TRF-CHE-KU) [MRG5480224]; Kasetsart University Research and Development Institute (KURDI) [7.58]; Fellowship of Capacity Building for Kasetsart University on Internationalization [0513.10109/1757]; Faculty of Science, Kasetsart University [PM4/2558, STS1/2558]; Center for Advanced Studies in Tropical Natural Resources, National Research University-Kasetsart University (CASTNAR, NRU-KU, Thailand) [6/2558]; Science Achievement Scholarship of Thailand (SAST) from the Office of the Higher Education Commission [5717400071, 5717400381]
License
CC BY
Rights
Authors
Publication Source
WOS