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Cavity Closure of 2-Hydroxypropyl–Cyclodextrin: Replica Exchange Molecular Dynamics Simulations
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Metadata
Document Title
Cavity Closure of 2-Hydroxypropyl--Cyclodextrin: Replica Exchange Molecular Dynamics Simulations
Author
Kerdpol K, Kicuntod J, Wolschann P, Mori S, Rungnim C, Kunaseth M, Okumura H, Kungwan N, Rungrotmongkol T
Name from Authors Collection
Affiliations
Chiang Mai University; Chulalongkorn University; University of Vienna; University of Vienna; Ibaraki University; National Science & Technology Development Agency - Thailand; National Nanotechnology Center (NANOTEC); National Institutes of Natural Sciences (NINS) - Japan; Institute for Molecular Science (IMS); Chiang Mai University; Chulalongkorn University; Chulalongkorn University
Type
Article
Source Title
POLYMERS
Year
2019
Volume
11
Issue
1
Open Access
Green Published, Green Submitted, gold
Publisher
MDPI
DOI
10.3390/polym11010145
Format
Abstract
2-Hydroxypropyl--cyclodextrin (HPCD) has unique properties to enhance the stability and the solubility of low water-soluble compounds by inclusion complexation. An understanding of the structural properties of HPCD and its derivatives, based on the number of 2-hydroxypropyl (HP) substituents at the -d-glucopyranose subunits is rather important. In this work, replica exchange molecular dynamics simulations were performed to investigate the conformational changes of single- and double-sided HP-substitution, called 6-HPCDs and 2,6-HPCDs, respectively. The results show that the glucose subunits in both 6-HPCDs and 2,6-HPCDs have a lower chance of flipping than in CD. Also, HP groups occasionally block the hydrophobic cavity of HPCDs, thus hindering drug inclusion. We found that HPCDs with a high number of HP-substitutions are more likely to be blocked, while HPCDs with double-sided HP-substitutions have an even higher probability of being blocked. Overall, 6-HPCDs with three and four HP-substitutions are highlighted as the most suitable structures for guest encapsulation, based on our conformational analyses, such as structural distortion, the radius of gyration, circularity, and cavity self-closure of the HPCDs.
Keyword
2-hydroxypropyl--cyclodextrin (HPCD) | Cavity self-closure | Conformational change | Replica exchange molecular dynamics (REMD)
Industrial Classification
Knowledge Taxonomy Level 1
Knowledge Taxonomy Level 2
Knowledge Taxonomy Level 3
Funding Sponsor
Thailand Research Fund [RSA5980069, RSA6180044]; Chiang Mai University; Chulalongkorn University (CU); ASEAN-European Academic University Network (ASEA-UNINET); JSPS KAKENHI [JP18H04233]
Publication Source
WOS