{"id":5193,"date":"2023-10-03T09:52:23","date_gmt":"2023-10-03T02:52:23","guid":{"rendered":"https:\/\/www.nstda.or.th\/noc\/?p=5193"},"modified":"2023-10-05T17:04:59","modified_gmt":"2023-10-05T10:04:59","slug":"genome-mitragyna-speciosa","status":"publish","type":"post","link":"https:\/\/www.nstda.or.th\/noc\/research-outputs\/genome-mitragyna-speciosa\/","title":{"rendered":"Genome -Mitragyna speciosa"},"content":{"rendered":"\t\t<div data-elementor-type=\"wp-post\" data-elementor-id=\"5193\" class=\"elementor elementor-5193\" data-elementor-post-type=\"post\">\n\t\t\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-1984669 elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"1984669\" data-element_type=\"section\" data-e-type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-50 elementor-top-column elementor-element elementor-element-6c96987\" data-id=\"6c96987\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-8f0c045 elementor-widget elementor-widget-heading\" data-id=\"8f0c045\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"heading.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t<h2 class=\"elementor-heading-title elementor-size-default\"><i>Mitragyna speciosa<\/i><\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-cfddb50 elementor-widget elementor-widget-text-editor\" data-id=\"cfddb50\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p><span class=\"elementor-icon-list-text elementor-post-info__item elementor-post-info__item--type-terms\"><span class=\"elementor-post-info__terms-list\"><a class=\"elementor-post-info__terms-list-item\" href=\"https:\/\/www.nstda.or.th\/noc\/category\/research-outputs\/genome-assemblies\/\">Genome assemblies<\/a><\/span><\/span><span class=\"elementor-icon-list-text elementor-post-info__item elementor-post-info__item--type-date\"><span class=\"elementor-post-info__item-prefix\">\u00a0 Post Date :<\/span>\u00a018\/10\/2022<\/span><\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-8a8882a elementor-widget elementor-widget-text-editor\" data-id=\"8a8882a\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<div class=\"elementor-element elementor-element-3bb4027 elementor-widget elementor-widget-text-editor\" style=\"flex-basis: var(--flex-basis); flex-grow: var(--flex-grow); flex-shrink: var(--flex-shrink); order: var(--order); align-self: var(--align-self); flex-direction: var(--flex-direction); flex-wrap: var(--flex-wrap); justify-content: var(--justify-content); align-items: var(--align-items); align-content: var(--align-content); gap: var(--gap); --swiper-theme-color: #000; --swiper-navigation-size: 44px; --swiper-pagination-bullet-size: 6px; --swiper-pagination-bullet-horizontal-gap: 6px; --widgets-spacing: 20px 20px; width: 530px;\" data-id=\"3bb4027\" data-element_type=\"widget\" data-widget_type=\"text-editor.default\">\n<div class=\"elementor-widget-container\" style=\"transition: background .3s,border .3s,border-radius .3s,box-shadow .3s,transform var(--e-transform-transition-duration,.4s);\">\n<div class=\"elementor-element elementor-element-3bb4027 elementor-widget elementor-widget-text-editor\" data-id=\"3bb4027\" data-element_type=\"widget\" data-widget_type=\"text-editor.default\">\n<div class=\"elementor-widget-container\">\n<p><strong>Local name:<\/strong> \u0e01\u0e23\u0e30\u0e17\u0e48\u0e2d\u0e21<\/p>\n<\/div>\n<\/div>\n<div class=\"elementor-element elementor-element-927bc68 elementor-widget elementor-widget-text-editor\" data-id=\"927bc68\" data-element_type=\"widget\" data-widget_type=\"text-editor.default\">\n<div class=\"elementor-widget-container\">\n<p><strong>Method:<\/strong> HiC assembly<\/p>\n<p><strong>Assembly level:<\/strong>\u00a0Chromosome<\/p>\n<p><strong>BioProject: <\/strong><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/PRJNA849364\/\" target=\"_blank\" rel=\"noopener\">PRJNA698764<\/a><\/p>\n<p><strong>Genome sequence:<\/strong> <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/nuccore\/JAMWEH000000000\" target=\"_blank\" rel=\"noopener\">JAMWEH000000000<\/a><\/p>\n<p><strong>Annotation Data (Download):<\/strong> <a href=\"https:\/\/waa.inter.nstda.or.th\/stks\/pub\/noc\/GenomeData\/kratom_GFF_final.gff3\" target=\"_blank\" rel=\"noopener\">gff3<\/a>,<a href=\"https:\/\/waa.inter.nstda.or.th\/stks\/pub\/noc\/GenomeData\/KRATOM_CDS_final.fasta\" target=\"_blank\" rel=\"noopener\">CDS<\/a>, <a href=\"https:\/\/waa.inter.nstda.or.th\/stks\/pub\/noc\/GenomeData\/KRATOM_protein_final.fasta\" target=\"_blank\" rel=\"noopener\">protein<\/a><\/p>\n<p><strong>Publication:<\/strong> <a href=\"https:\/\/doi.org\/10.3390\/biology11101492\">A Chromosome-Scale Genome Assembly of <em>Mitragyna speciosa<\/em> (Kratom) and the Assessment of Its Genetic Diversity in Thailand<\/a><\/p>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t<div class=\"elementor-column elementor-col-50 elementor-top-column elementor-element elementor-element-a3935d7\" data-id=\"a3935d7\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-93b6c26 elementor-arrows-position-inside elementor-pagination-position-outside elementor-widget elementor-widget-image-carousel\" data-id=\"93b6c26\" data-element_type=\"widget\" data-e-type=\"widget\" data-settings=\"{&quot;slides_to_show&quot;:&quot;1&quot;,&quot;navigation&quot;:&quot;both&quot;,&quot;autoplay&quot;:&quot;yes&quot;,&quot;pause_on_hover&quot;:&quot;yes&quot;,&quot;pause_on_interaction&quot;:&quot;yes&quot;,&quot;autoplay_speed&quot;:5000,&quot;infinite&quot;:&quot;yes&quot;,&quot;effect&quot;:&quot;slide&quot;,&quot;speed&quot;:500}\" data-widget_type=\"image-carousel.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t<div class=\"elementor-image-carousel-wrapper swiper\" role=\"region\" aria-roledescription=\"carousel\" aria-label=\"Image Carousel\" dir=\"ltr\">\n\t\t\t<div class=\"elementor-image-carousel swiper-wrapper\" aria-live=\"off\">\n\t\t\t\t\t\t\t\t<div class=\"swiper-slide\" role=\"group\" aria-roledescription=\"slide\" aria-label=\"1 of 2\"><figure class=\"swiper-slide-inner\"><img decoding=\"async\" class=\"swiper-slide-image\" src=\"https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2023\/10\/kratom_taxo.jpg\" alt=\"kratom_taxo\" \/><\/figure><\/div><div class=\"swiper-slide\" role=\"group\" aria-roledescription=\"slide\" aria-label=\"2 of 2\"><figure class=\"swiper-slide-inner\"><img decoding=\"async\" class=\"swiper-slide-image\" src=\"https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2023\/10\/kratom_circos.png\" alt=\"kratom_circos\" \/><\/figure><\/div>\t\t\t<\/div>\n\t\t\t\t\t\t\t\t\t\t\t\t<div class=\"elementor-swiper-button elementor-swiper-button-prev\" role=\"button\" tabindex=\"0\">\n\t\t\t\t\t\t<i aria-hidden=\"true\" class=\"eicon-chevron-left\"><\/i>\t\t\t\t\t<\/div>\n\t\t\t\t\t<div class=\"elementor-swiper-button elementor-swiper-button-next\" role=\"button\" tabindex=\"0\">\n\t\t\t\t\t\t<i aria-hidden=\"true\" class=\"eicon-chevron-right\"><\/i>\t\t\t\t\t<\/div>\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t<div class=\"swiper-pagination\"><\/div>\n\t\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-939f9d1 elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"939f9d1\" data-element_type=\"section\" data-e-type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-cfe1ed2\" data-id=\"cfe1ed2\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-172f8a7 elementor-align-center elementor-widget elementor-widget-button\" data-id=\"172f8a7\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"button.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<div class=\"elementor-button-wrapper\">\n\t\t\t\t\t<a class=\"elementor-button elementor-button-link elementor-size-sm\" href=\"https:\/\/www.nstda.or.th\/noc\/research-outputs\/genome-assemblies\/\">\n\t\t\t\t\t\t<span class=\"elementor-button-content-wrapper\">\n\t\t\t\t\t\t\t\t\t<span class=\"elementor-button-text\">Genome assemblies<\/span>\n\t\t\t\t\t<\/span>\n\t\t\t\t\t<\/a>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"<p>Mitragyna speciosa Genome assemblies\u00a0 Post Date :\u00a018\/10\/2022 Local name: \u0e01\u0e23\u0e30\u0e17\u0e48\u0e2d\u0e21 Method: HiC assembly Assembly level:\u00a0Chromosome BioProject: PRJNA698764 Genome sequence: JAMWEH000000000 Annotation Data (Download): gff3,CDS, protein Publication: A Chromosome-Scale Genome Assembly of Mitragyna speciosa (Kratom) and the Assessment of Its Genetic Diversity in Thailand Genome assemblies<\/p>\n","protected":false},"author":5,"featured_media":2518,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_wp_rev_ctl_limit":""},"categories":[212],"tags":[],"class_list":["post-5193","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-research-outputs"],"blocksy_meta":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.2 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Genome -Mitragyna speciosa - National Omics Center<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.nstda.or.th\/noc\/research-outputs\/genome-mitragyna-speciosa\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Genome -Mitragyna speciosa - National Omics Center\" \/>\n<meta property=\"og:description\" content=\"Mitragyna speciosa Genome assemblies\u00a0 Post Date :\u00a018\/10\/2022 Local name: \u0e01\u0e23\u0e30\u0e17\u0e48\u0e2d\u0e21 Method: HiC assembly Assembly level:\u00a0Chromosome BioProject: PRJNA698764 Genome sequence: JAMWEH000000000 Annotation Data (Download): gff3,CDS, protein Publication: A Chromosome-Scale Genome Assembly of Mitragyna speciosa (Kratom) and the Assessment of Its Genetic Diversity in Thailand Genome assemblies\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.nstda.or.th\/noc\/research-outputs\/genome-mitragyna-speciosa\/\" \/>\n<meta property=\"og:site_name\" content=\"National Omics Center\" \/>\n<meta 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