{"id":4914,"date":"2023-09-27T15:41:21","date_gmt":"2023-09-27T08:41:21","guid":{"rendered":"https:\/\/www.nstda.or.th\/noc\/?p=4914"},"modified":"2026-02-03T17:06:26","modified_gmt":"2026-02-03T10:06:26","slug":"genome-avicennia-rumphiana","status":"publish","type":"post","link":"https:\/\/www.nstda.or.th\/noc\/research-outputs\/genome-avicennia-rumphiana\/","title":{"rendered":"Genome -Avicennia rumphiana"},"content":{"rendered":"\t\t<div data-elementor-type=\"wp-post\" data-elementor-id=\"4914\" class=\"elementor elementor-4914\" data-elementor-post-type=\"post\">\n\t\t\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-45ce527 elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"45ce527\" data-element_type=\"section\" data-e-type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-50 elementor-top-column elementor-element elementor-element-9f96ec7\" data-id=\"9f96ec7\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-fbb7b09 elementor-widget elementor-widget-heading\" data-id=\"fbb7b09\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"heading.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t<h2 class=\"elementor-heading-title elementor-size-default\"><i>Avicennia rumphiana<\/i><\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-d76fcc3 elementor-widget elementor-widget-text-editor\" data-id=\"d76fcc3\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p><span class=\"elementor-icon-list-text elementor-post-info__item elementor-post-info__item--type-terms\"><span class=\"elementor-post-info__terms-list\"><a class=\"elementor-post-info__terms-list-item\" href=\"https:\/\/www.nstda.or.th\/noc\/category\/research-outputs\/genome-assemblies\/\">Genome assemblies<\/a> \u00a0<\/span><\/span><span class=\"elementor-icon-list-text elementor-post-info__item elementor-post-info__item--type-date\"><span class=\"elementor-post-info__item-prefix\">Post Date :<\/span> 4\/10\/2023<\/span><\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-d6268b8 elementor-widget elementor-widget-text-editor\" data-id=\"d6268b8\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p><strong>Local name:<\/strong> \u0e41\u0e2a\u0e21\u0e02\u0e19<\/p>\n<p><strong>Location:<\/strong> Prachuap Khiri Khan, Thailand<\/p>\n<p><strong>Method:<\/strong> 10x Genomics\u00a0sequencing technology<\/p>\n<p><strong>Assembly level: <\/strong> Scaffold<\/p>\n<p><strong>BioProject:<\/strong> <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/PRJNA797928\/\">PRJNA797928<\/a><\/p>\n<p><strong>Genome sequence:<\/strong> <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/datasets\/genome\/GCA_042140295.1\/\">ASM4214029v1<\/a><\/p>\n<p><strong>Annotation Data (Download):<\/strong> <a href=\"https:\/\/waa.inter.nstda.or.th\/stks\/pub\/noc\/GenomeData\/Arumphiana.gff3\">gff3<\/a>, CDS, Protein<\/p>\n<p><strong>Publication:<\/strong> <a href=\"https:\/\/journals.plos.org\/plosone\/article?id=10.1371\/journal.pone.0318091\">Assembly of the salt-secreting mangrove Avicennia rumphiana<\/a><\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t<div class=\"elementor-column elementor-col-50 elementor-top-column elementor-element elementor-element-f5e5469\" data-id=\"f5e5469\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-c976303 elementor-widget elementor-widget-image\" data-id=\"c976303\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"image.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<img fetchpriority=\"high\" decoding=\"async\" width=\"1024\" height=\"683\" src=\"https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2023\/09\/main_\u0e41\u0e2a\u0e21\u0e02\u0e19-1.jpg\" class=\"attachment-large size-large wp-image-5279\" alt=\"\" srcset=\"https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2023\/09\/main_\u0e41\u0e2a\u0e21\u0e02\u0e19-1.jpg 1024w, https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2023\/09\/main_\u0e41\u0e2a\u0e21\u0e02\u0e19-1-300x200.jpg 300w, https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2023\/09\/main_\u0e41\u0e2a\u0e21\u0e02\u0e19-1-768x512.jpg 768w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/>\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-e3797eb elementor-widget elementor-widget-text-editor\" data-id=\"e3797eb\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p style=\"text-align: center;\">\u0e25\u0e31\u0e01\u0e29\u0e13\u0e30\u0e17\u0e32\u0e07\u0e2a\u0e31\u0e13\u0e10\u0e32\u0e19\u0e27\u0e34\u0e17\u0e22\u0e32 (morphology) \u0e02\u0e2d\u0e07\u0e41\u0e2a\u0e21\u0e02\u0e19; (\u0e0b\u0e49\u0e32\u0e22) \u0e43\u0e1a; (\u0e02\u0e27\u0e32\u0e1a\u0e19) \u0e14\u0e2d\u0e01; (\u0e02\u0e27\u0e32\u0e25\u0e48\u0e32\u0e07) \u0e1c\u0e25<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-ed5a758 elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"ed5a758\" data-element_type=\"section\" data-e-type=\"section\" data-settings=\"{&quot;background_background&quot;:&quot;classic&quot;}\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-50 elementor-top-column elementor-element elementor-element-814f2d7\" data-id=\"814f2d7\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-8608d7a elementor-widget elementor-widget-image\" data-id=\"8608d7a\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"image.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<img decoding=\"async\" width=\"1024\" height=\"1024\" src=\"https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2023\/09\/AR_chloroplast.png\" class=\"attachment-large size-large wp-image-5316\" alt=\"\" srcset=\"https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2023\/09\/AR_chloroplast.png 1024w, https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2023\/09\/AR_chloroplast-300x300.png 300w, https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2023\/09\/AR_chloroplast-150x150.png 150w, https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2023\/09\/AR_chloroplast-768x768.png 768w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/>\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t<div class=\"elementor-column elementor-col-50 elementor-top-column elementor-element elementor-element-8a48843\" data-id=\"8a48843\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-fd245e3 elementor-widget elementor-widget-text-editor\" data-id=\"fd245e3\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<h4>Choloplast genome<\/h4>\n<p><strong>Accession:<\/strong> <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/nucleotide\/NC_061403.1\">NC_061403.1<\/a><\/p>\n<p><strong>Type:<\/strong> circular<\/p>\n<p><strong>Length:<\/strong> 148264 bp<\/p>\n<p><strong>Publication:<\/strong> <a href=\"https:\/\/doi.org\/10.3390\/biology11030383\">Comparative Analysis and Phylogenetic Relationships of Ceriops Species (Rhizophoraceae) and Avicennia lanata (Acanthaceae): Insight into the Chloroplast Genome Evolution between Middle and Seaward Zones of Mangrove Forests<\/a><\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-62f015a elementor-widget elementor-widget-text-editor\" data-id=\"62f015a\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p><strong>\u0e04\u0e33\u0e2d\u0e18\u0e34\u0e1a\u0e32\u0e22\u0e20\u0e32\u0e1e:<\/strong> \u0e41\u0e1c\u0e19\u0e20\u0e32\u0e1e Chloroplast genome \u0e02\u0e2d\u0e07\u0e41\u0e2a\u0e21\u0e02\u0e19 (<em>Avicennia rumphiana<\/em>) \u0e42\u0e14\u0e22\u0e27\u0e07\u0e19\u0e2d\u0e01\u0e2a\u0e38\u0e14\u0e41\u0e2a\u0e14\u0e07\u0e15\u0e33\u0e41\u0e2b\u0e19\u0e48\u0e07\u0e17\u0e35\u0e48\u0e15\u0e31\u0e49\u0e07\u0e02\u0e2d\u0e07\u0e22\u0e35\u0e19\u0e1a\u0e19 Chloroplast genome \u0e22\u0e35\u0e19\u0e17\u0e35\u0e48\u0e41\u0e2a\u0e14\u0e07\u0e2d\u0e22\u0e39\u0e48\u0e14\u0e49\u0e32\u0e19\u0e19\u0e2d\u0e01\u0e02\u0e2d\u0e07\u0e27\u0e07\u0e08\u0e30\u0e16\u0e39\u0e01\u0e16\u0e2d\u0e14\u0e23\u0e2b\u0e31\u0e2a\u0e43\u0e19\u0e17\u0e34\u0e28\u0e15\u0e32\u0e21\u0e40\u0e02\u0e47\u0e21\u0e19\u0e32\u0e2c\u0e34\u0e01\u0e32 \u0e2a\u0e48\u0e27\u0e19\u0e22\u0e35\u0e19\u0e17\u0e35\u0e48\u0e2d\u0e22\u0e39\u0e48\u0e14\u0e49\u0e32\u0e19\u0e43\u0e19\u0e08\u0e30\u0e16\u0e39\u0e01\u0e16\u0e2d\u0e14\u0e23\u0e2b\u0e31\u0e2a\u0e43\u0e19\u0e17\u0e34\u0e28\u0e17\u0e27\u0e19\u0e40\u0e02\u0e47\u0e21\u0e19\u0e32\u0e2c\u0e34\u0e01\u0e32 \u0e42\u0e14\u0e22\u0e22\u0e35\u0e19\u0e17\u0e35\u0e48\u0e2d\u0e22\u0e39\u0e48\u0e43\u0e19 functional group \u0e17\u0e35\u0e48\u0e15\u0e48\u0e32\u0e07\u0e01\u0e31\u0e19\u0e08\u0e30\u0e41\u0e2a\u0e14\u0e07\u0e14\u0e49\u0e27\u0e22\u0e2a\u0e35\u0e17\u0e35\u0e48\u0e15\u0e48\u0e32\u0e07\u0e01\u0e31\u0e19; \u0e41\u0e16\u0e1a\u0e2a\u0e35\u0e40\u0e17\u0e32\u0e40\u0e02\u0e49\u0e21\u0e41\u0e2a\u0e14\u0e07\u0e04\u0e48\u0e32 GC content \u0e2a\u0e48\u0e27\u0e19\u0e41\u0e16\u0e1a\u0e2a\u0e35\u0e40\u0e17\u0e32\u0e2d\u0e48\u0e2d\u0e19\u0e41\u0e2a\u0e14\u0e07\u0e04\u0e48\u0e32 AT content \u0e02\u0e2d\u0e07\u0e08\u0e35\u0e42\u0e19\u0e21<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-14e9114 elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"14e9114\" data-element_type=\"section\" data-e-type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-50 elementor-top-column elementor-element elementor-element-121b6b9\" data-id=\"121b6b9\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-f0f71b3 elementor-align-center elementor-widget elementor-widget-button\" data-id=\"f0f71b3\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"button.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<div class=\"elementor-button-wrapper\">\n\t\t\t\t\t<a class=\"elementor-button elementor-button-link elementor-size-sm\" href=\"https:\/\/www.nstda.or.th\/noc\/research-outputs\/mangrove-genome-project\/\">\n\t\t\t\t\t\t<span class=\"elementor-button-content-wrapper\">\n\t\t\t\t\t\t\t\t\t<span class=\"elementor-button-text\">Mangrove genome project<\/span>\n\t\t\t\t\t<\/span>\n\t\t\t\t\t<\/a>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t<div class=\"elementor-column elementor-col-50 elementor-top-column elementor-element elementor-element-4ca459e\" data-id=\"4ca459e\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-5731cdc elementor-align-center elementor-widget elementor-widget-button\" data-id=\"5731cdc\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"button.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<div class=\"elementor-button-wrapper\">\n\t\t\t\t\t<a class=\"elementor-button elementor-button-link elementor-size-sm\" href=\"https:\/\/www.nstda.or.th\/noc\/research-outputs\/genome-assemblies\/\">\n\t\t\t\t\t\t<span class=\"elementor-button-content-wrapper\">\n\t\t\t\t\t\t\t\t\t<span class=\"elementor-button-text\">Genome assemblies<\/span>\n\t\t\t\t\t<\/span>\n\t\t\t\t\t<\/a>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"<p>Avicennia rumphiana Genome assemblies \u00a0Post Date : 4\/10\/2023 Local name: \u0e41\u0e2a\u0e21\u0e02\u0e19 Location: Prachuap Khiri Khan, Thailand Method: 10x Genomics\u00a0sequencing technology Assembly level: Scaffold BioProject: PRJNA797928 Genome sequence: ASM4214029v1 Annotation Data (Download): gff3, CDS, Protein Publication: Assembly of the salt-secreting mangrove Avicennia rumphiana \u0e25\u0e31\u0e01\u0e29\u0e13\u0e30\u0e17\u0e32\u0e07\u0e2a\u0e31\u0e13\u0e10\u0e32\u0e19\u0e27\u0e34\u0e17\u0e22\u0e32 (morphology) \u0e02\u0e2d\u0e07\u0e41\u0e2a\u0e21\u0e02\u0e19; (\u0e0b\u0e49\u0e32\u0e22) \u0e43\u0e1a; (\u0e02\u0e27\u0e32\u0e1a\u0e19) \u0e14\u0e2d\u0e01; (\u0e02\u0e27\u0e32\u0e25\u0e48\u0e32\u0e07) \u0e1c\u0e25 Choloplast genome Accession: NC_061403.1 [&hellip;]<\/p>\n","protected":false},"author":5,"featured_media":2518,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_wp_rev_ctl_limit":""},"categories":[212],"tags":[],"class_list":["post-4914","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-research-outputs"],"blocksy_meta":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.2 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Genome -Avicennia rumphiana - National Omics Center<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.nstda.or.th\/noc\/research-outputs\/genome-avicennia-rumphiana\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Genome -Avicennia rumphiana - National Omics Center\" \/>\n<meta property=\"og:description\" content=\"Avicennia rumphiana Genome assemblies \u00a0Post Date : 4\/10\/2023 Local name: \u0e41\u0e2a\u0e21\u0e02\u0e19 Location: Prachuap Khiri Khan, Thailand Method: 10x Genomics\u00a0sequencing technology Assembly level: Scaffold BioProject: PRJNA797928 Genome sequence: ASM4214029v1 Annotation Data (Download): gff3, CDS, Protein Publication: Assembly of the salt-secreting mangrove Avicennia rumphiana \u0e25\u0e31\u0e01\u0e29\u0e13\u0e30\u0e17\u0e32\u0e07\u0e2a\u0e31\u0e13\u0e10\u0e32\u0e19\u0e27\u0e34\u0e17\u0e22\u0e32 (morphology) \u0e02\u0e2d\u0e07\u0e41\u0e2a\u0e21\u0e02\u0e19; (\u0e0b\u0e49\u0e32\u0e22) \u0e43\u0e1a; (\u0e02\u0e27\u0e32\u0e1a\u0e19) \u0e14\u0e2d\u0e01; (\u0e02\u0e27\u0e32\u0e25\u0e48\u0e32\u0e07) \u0e1c\u0e25 Choloplast genome Accession: NC_061403.1 [&hellip;]\" \/>\n<meta property=\"og:url\" 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