{"id":3008,"date":"2022-10-17T13:45:54","date_gmt":"2022-10-17T06:45:54","guid":{"rendered":"http:\/\/10.228.26.34:30087\/noc\/?p=3008"},"modified":"2025-02-03T12:32:07","modified_gmt":"2025-02-03T05:32:07","slug":"genomics","status":"publish","type":"post","link":"https:\/\/www.nstda.or.th\/noc\/services\/genomics\/","title":{"rendered":"Genomics"},"content":{"rendered":"\t\t<div data-elementor-type=\"wp-post\" data-elementor-id=\"3008\" class=\"elementor elementor-3008\" data-elementor-post-type=\"post\">\n\t\t\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-32d176bf elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"32d176bf\" data-element_type=\"section\" data-e-type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-5bc70988\" data-id=\"5bc70988\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-edf9c41 elementor-widget elementor-widget-image\" data-id=\"edf9c41\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"image.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<img fetchpriority=\"high\" decoding=\"async\" width=\"1024\" height=\"683\" src=\"https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/noc-image-06-1024x683.jpg\" class=\"attachment-large size-large wp-image-3734\" alt=\"\" srcset=\"https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/noc-image-06-1024x683.jpg 1024w, https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/noc-image-06-300x200.jpg 300w, https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/noc-image-06-768x512.jpg 768w, https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/noc-image-06-1536x1024.jpg 1536w, https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/noc-image-06-2048x1366.jpg 2048w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/>\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-452027e elementor-widget elementor-widget-text-editor\" data-id=\"452027e\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<h1>Genomics<\/h1>\n<p>Focus on the area of structural, evolutionary and functional genomics of microbes, plants, and animals. Research on microbial genomes includes bacteria, insect-fungi, yeasts, metagenome sequencing and detection of variation in viral genomes. We also employ genomic technologies, such as RNA-sequencing, genotyping by sequencing, targeted enrichment sequencing, construction of BAC\/fosmid libraries, to study complex eukaryotic organisms such as oil palm (Elaeis spp.), rubber tree (Hevea brasiliensis), cassava (Manihot esculenta), mungbean (Vigna radiata), maize, eucalyptus and black tiger shrimp (Penaeus monodon).<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<section class=\"elementor-section elementor-inner-section elementor-element elementor-element-45878ce elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"45878ce\" data-element_type=\"section\" data-e-type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-50 elementor-inner-column elementor-element elementor-element-f8cb8b9\" data-id=\"f8cb8b9\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-d6e31d4 elementor-widget elementor-widget-image\" data-id=\"d6e31d4\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"image.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<img decoding=\"async\" width=\"1024\" height=\"717\" src=\"https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/shutterstock_2006929418-1024x717.jpg\" class=\"attachment-large size-large wp-image-3777\" alt=\"\" srcset=\"https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/shutterstock_2006929418-1024x717.jpg 1024w, https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/shutterstock_2006929418-300x210.jpg 300w, https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/shutterstock_2006929418-768x538.jpg 768w, https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/shutterstock_2006929418-1536x1075.jpg 1536w, https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/shutterstock_2006929418-2048x1434.jpg 2048w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/>\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t<div class=\"elementor-column elementor-col-50 elementor-inner-column elementor-element elementor-element-676b260\" data-id=\"676b260\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-4618f6c elementor-widget elementor-widget-text-editor\" data-id=\"4618f6c\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<h4>DNA sequencing<\/h4>\n<p>We employed short-read and long-read sequencing technologies such as Ion Torrent, Illumina, MGISEQ, and PacBio Sequel to study genetic variations. We have experience in handling large sequencing data sets for de novo genome assembly, reference mapping, gene annotation, and comparative genomics.<\/p>\n<h4>High Molecular Weight DNA library construction<\/h4>\n<p>Fosmid\/ BAC libraries and 20kb-PacBio libraries are routinely constructed in the lab.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<div class=\"elementor-element elementor-element-ea402b6 elementor-widget elementor-widget-text-editor\" data-id=\"ea402b6\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<h4>Genotype by sequencing<\/h4>\n<p>Genotyping-by-sequencing (GBS) techniques such as reduced representation library (RRL) sequencing, targeted enrichment sequencing or amplicon sequencing have been used to study genetic variation in populations. Linkage phase can be analyzed with phenotypic data to find a correlation between genotype and phenotype and then develop markers for genetic improvement programs.<\/p>\n<h4>Marker development<\/h4>\n<p>We employ a genotyping-by-sequencing technique to discover and genotype single nucleotide polymorphism (SNP) markers in individuals from bi-parental crosses or germplasm collections and carry out marker-trait association analyses to identify SNP markers linked to important agronomic traits.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<section class=\"elementor-section elementor-inner-section elementor-element elementor-element-b1e9a8c elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"b1e9a8c\" data-element_type=\"section\" data-e-type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-50 elementor-inner-column elementor-element elementor-element-ad9e95f\" data-id=\"ad9e95f\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-44b5c97 elementor-widget elementor-widget-text-editor\" data-id=\"44b5c97\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<h4>Seed purity test<\/h4>\n<p>We provide a quick and accurate DNA-based purity testing service for a variety of F1 hybrid seeds such as corn, cucumber, watermelon, chili pepper, tomato, melon, and bitter gourd. We customize our single nucleotide polymorphism (SNP) markers to ensure that they can differentiate closely related cultivars. With our ultra high-throughput SNP genotyping platform, we are capable of genotyping several thousand samples a week.<\/p>\n<h4>Clonal identification<\/h4>\n<p>We offer a clonal identification service and provide a SNP-based DNA fingerprint profile for each individual tested. We employ a genotyping-by-sequencing technique to obtain a genome-wide SNP pattern from each sample. This technique allows us to distinguish closely related varieties or strains.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-7a075259 elementor-widget elementor-widget-text-editor\" data-id=\"7a075259\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<h4>Quantitative trait loci (QTL) Mapping\/ Genome-Wide Association Studies (GWAS)<\/h4>\n<p>We provide SNP genotyping services for cultivar identification and marker-trait association analyses such as quantitative trait loci (QTL) mapping or genome-wide association analyses (GWAS).<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t<div class=\"elementor-column elementor-col-50 elementor-inner-column elementor-element elementor-element-94ca4b5\" data-id=\"94ca4b5\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-9431aeb elementor-widget elementor-widget-image\" data-id=\"9431aeb\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"image.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<img decoding=\"async\" width=\"683\" height=\"1024\" src=\"https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/noc-image-07-683x1024.jpg\" class=\"attachment-large size-large wp-image-3735\" alt=\"\" srcset=\"https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/noc-image-07-683x1024.jpg 683w, https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/noc-image-07-200x300.jpg 200w, https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/noc-image-07-768x1152.jpg 768w, https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/noc-image-07-1024x1536.jpg 1024w, https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/noc-image-07-1365x2048.jpg 1365w, https:\/\/www.nstda.or.th\/noc\/wp-content\/uploads\/2022\/11\/noc-image-07.jpg 1700w\" sizes=\"(max-width: 683px) 100vw, 683px\" \/>\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"<p>Genomics Focus on the area of structural, evolutionary and functional genomics of microbes, plants, and animals. Research on microbial genomes includes bacteria, insect-fungi, yeasts, metagenome sequencing and detection of variation in viral genomes. We also employ genomic technologies, such as RNA-sequencing, genotyping by sequencing, targeted enrichment sequencing, construction of BAC\/fosmid libraries, to study complex eukaryotic [&hellip;]<\/p>\n","protected":false},"author":3,"featured_media":3730,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_wp_rev_ctl_limit":""},"categories":[1],"tags":[245,244,246],"class_list":["post-3008","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-services","tag-dna-sequencing","tag-genomics","tag-genotype"],"blocksy_meta":{"styles_descriptor":{"styles":{"desktop":"","tablet":"","mobile":""},"google_fonts":[],"version":6}},"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.2 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Genomics - National Omics Center<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.nstda.or.th\/noc\/services\/genomics\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Genomics - National Omics Center\" \/>\n<meta property=\"og:description\" content=\"Genomics Focus on the area of structural, evolutionary and functional genomics of microbes, plants, and animals. 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